Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014831: Thermaerobacter marianensis DSM 12885 chromosome, complete genome

NCBI: NC_014831

Host Lineage: Thermaerobacter marianensis; Thermaerobacter; Clostridiales Family XVII; Clostridiales; Firmicutes; Bacteria

General Information: Country: Pacific Ocean; Environment: Mud; Isolation: mud from the Challenger Deep in the Mariana; Hyperthermophile; Temp: 74-76C. Thermaerobacter marianensis was isolated from mud from the Mariana Trench in the Pacific Ocean at a depth of >10000 meters.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18965*4370634742Island text1.9975715.042416.5623Neighbours11BLASTN+IslandViewer 8965.gbk
265408*8880223395Island text2.9586412.627722.5362Neighbours11BLASTN65408.gbk
3149626*17221622591Island text3.039213.965224.2478Neighbours11BLASTN149626.gbk
4218696*24079722102Island text2.1226416.349318.6329Neighbours11BLASTN218696.gbk
528575930920623448Island text1.5888214.421215.0749Neighbours11BLASTN+285759.gbk
6329983*35731327331Island text1.7348919.639922.4632Neighbours11BLASTN+329983.gbk
7388007*41704429038Island text3.3038518.111316.9087Neighbours11BLASTN+IslandViewer 388007.gbk
878601180816322153Island text1.5620613.730314.0708Neighbours11BLASTN+IslandViewer 786011.gbk
986661489112124508Island text1.9007314.06559.76367Neighbours11BLASTN+866614.gbk
101140356*115919118836Island text1.5738213.515311.8589Neighbours11BLASTN1140356.gbk
111557485157659919115Island text2.2214715.390917.8686Neighbours11BLASTN+IslandViewer 1557485.gbk
121763408178910925702Island text1.9350217.140214.3653Neighbours11BLASTN1763408.gbk
131818968184009921132Island text2.9963715.666910.2091Neighbours11BLASTN+IslandViewer 1818968.gbk
141843835188451140677Island text2.3816515.056214.5689Neighbours11BLASTN+1843835.gbk
151906691195238745697Island text1.8087214.691910.8879Neighbours11BLASTN+1906691.gbk
162082304211433932036Island text4.9012919.649520.104Neighbours11BLASTNIslandViewer 2082304.gbk
172133060217362540566Island text1.8199516.146115.0341Neighbours11BLASTN+2133060.gbk
182201246222458723342Island text1.72813.120116.823Neighbours11BLASTN2201246.gbk
192224733225059925867Island text2.1802114.284412.2122Neighbours11BLASTN+IslandViewer 2224733.gbk
202258398229809939702Island text4.8511318.480817.2151Neighbours11BLASTN+IslandViewer 2258398.gbk
212397563242026622704Island text2.3553714.944114.2039Neighbours11BLASTN+2397563.gbk