Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014830: Intrasporangium calvum DSM 43043 chromosome, complete genome

NCBI: NC_014830

Host Lineage: Intrasporangium calvum; Intrasporangium; Intrasporangiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Country: Russia; Environment: Air; Isolation: Air in a school dining room; Temp: Mesophile; Temp: 37C; The organism was isolated on a meat-extract peptone agar plate from the air in aschool dining room. This organism produces branching mycelium and produces sporangia intercalary in the mycelial hyphae.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113179*4609932921Island text1.6770813.699113.6987Neighbours11BLASTN+IslandViewer 13179.gbk
2335380*37339338014Island text1.5509512.031413.5176Neighbours11BLASTN+IslandViewer 335380.gbk
353212255097018849Island text1.9010311.66512.4619NeighboursBLASTNIslandViewer 532122.gbk
485054287179121250Island text1.9119311.95598.18614Neighbours11BLASTN+IslandViewer 850542.gbk
51252249128855336305Island text3.03716.239117.4067Neighbours11BLASTN+IslandViewer 1252249.gbk
61602198162425922062Island text1.5811211.530316.5002Neighbours11BLASTN1602198.gbk
71871135*190186430730Island text2.1960616.069912.905Neighbours11BLASTNIslandViewer 1871135.gbk
82936589295478618198Island text1.9622612.372311.9686Neighbours11BLASTN+IslandViewer 2936589.gbk
93156873*318066423792Island text1.9517314.049813.9481Neighbours11BLASTNIslandViewer 3156873.gbk
103275474*329809922626Island text1.5386310.922310.3362Neighbours11BLASTN+IslandViewer 3275474.gbk
113387479343444046962Island text1.6308912.879812.5454Neighbours11BLASTN+IslandViewer 3387479.gbk
123438504349844059937Island text2.2372215.411715.5793Neighbours11BLASTN+IslandViewer 3438504.gbk
133870000389336423365Island text1.6362711.694412.0721Neighbours11BLASTN+IslandViewer 3870000.gbk
144012999*403999927001Island text1.4674913.369413.5217Neighbours11BLASTN4012999.gbk