Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014828: Ethanoligenens harbinense YUAN-3 chromosome, complete genome

NCBI: NC_014828

Host Lineage: Ethanoligenens harbinense; Ethanoligenens; Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Sludge; Isolation: Anaerobic activated sludge of molasses; Temp: Mesophile; Temp: 20 - 44C. Ethanoligenens harbinense is a strictly anaerobic, motile, chemo-organotrophic Gram-positive bacterium isolated from anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor. Ethanoligenens harbinense produces ethanol, acetate, hydrogen, and carbon dioxide during glucose fermentation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110780213167923878Island text2.3040740.674118.4936Neighbours31BLASTN+IslandViewer 107802.gbk
250134252589624555Island text1.8383737.189928.3896Neighbours31BLASTN+IslandViewer 501342.gbk
3541874*59479752924Island text2.27642.062220.3963Neighbours31BLASTN+IslandViewer 541874.gbk
463752366961132089Island text3.9419849.709616.1141Neighbours24BLASTNIslandViewer 637523.gbk
594391198509941189Island text2.5532843.79726.0935Neighbours35BLASTN+IslandViewer 943911.gbk
61019533*106523245700Island text2.2988439.125723.2456Neighbours41BLASTN+IslandViewer 1019533.gbk
71335154*139461359460Island text2.7477343.327923.0203Neighbours41BLASTN+IslandViewer 1335154.gbk
81632000165093718938Island text1.9826536.978719.5781Neighbours35BLASTNIslandViewer 1632000.gbk
91795781*182067424894Island text2.2655640.456918.3285Neighbours31BLASTNIslandViewer 1795781.gbk
101905479192666021182Island text1.9331437.410222.3642Neighbours35BLASTN+IslandViewer 1905479.gbk
111932971195174018770Island text1.8348136.717745.4501Neighbours114BLASTNIslandViewer 1932971.gbk
121987487*201536127875Island text1.8159239.257731.5876Neighbours11BLASTN+IslandViewer 1987487.gbk
132038692208731548624Island text2.1033239.866624.002Neighbours31BLASTN+IslandViewer 2038692.gbk
142497462*253021232751Island text1.8496836.503626.9339Neighbours41BLASTN+IslandViewer 2497462.gbk
152605798263609930302Island text2.5381542.489924.5971Neighbours31BLASTN+IslandViewer 2605798.gbk
162657623*268107823456Island text1.740434.484436.1067Neighbours11BLASTN+IslandViewer 2657623.gbk