Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014820: Cenarchaeum symbiosum A, complete genome

NCBI: NC_014820

Host Lineage: Cenarchaeum symbiosum; Cenarchaeum; Cenarchaeaceae; Cenarchaeales; Thaumarchaeota; Archaea

General Information: This organism is a psychrophilic crenarchaeon symbiont of an unnamed marine sponge of the genus Axinella. It was isolated from coastal waters off of Santa Barbara, CA, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111790117901Island text1.9879536.496427.0796Neighbours111.gbk
271565*11463143067Island text2.5792239.606226.0005Neighbours11BLASTNIslandViewer 71565.gbk
3117408*14808030673Island text2.4229544.295833.597Neighbours11BLASTNIslandViewer 117408.gbk
458244362698544543Island text2.2592235.244447.616Neighbours11IslandViewer 582443.gbk
5877724*90085123128Island text1.7210832.058653.7763Neighbours11BLASTN+IslandViewer 877724.gbk
61057826*108212524300Island text2.442739.322139.2796Neighbours11BLASTNIslandViewer 1057826.gbk
71087153*110547918327Island text1.7240832.511644.6522Neighbours11BLASTN+IslandViewer 1087153.gbk
81117961*114759929639Island text2.0507437.150125.13Neighbours11BLASTN+IslandViewer 1117961.gbk
91517927*153659918673Island text2.6087940.154852.9175Neighbours11BLASTN+IslandViewer 1517927.gbk
101618606*164808829483Island text3.8493747.772735.2061Neighbours11+IslandViewer 1618606.gbk
111989500204505255553Island text1.7936639.403736.4691Neighbours11BLASTNIslandViewer 1989500.gbk