Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014817: Asticcacaulis excentricus CB 48 chromosome 2, complete sequence

NCBI: NC_014817

Host Lineage: Asticcacaulis excentricus; Asticcacaulis; Caulobacteraceae; Caulobacterales; Proteobacteria; Bacteria

General Information: Environment: Fresh water; Isolation: Pondwater; Temp: Mesophile; Isolation: pond water. Asticcacaulis excentricus inhabits aquatic environments and plays an important part in biogeochemical cycling of organic nutrients. This bacterium undergoes an unusual developmental cycle in which a swarming motile cell becomes a stalked cell that is attached to a solid surface. The stalked cell then undergoes asymmetric cell division and produces one flagellated motile daughter cell and one stalked daughter cell. Thus, the asymmetric processes in this organism provide useful models for differentiation and development.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1297955809928305Island text2.0251633.701725.4395Neighbours11BLASTN+IslandViewer 29795.gbk
2142976*16583322858Island text1.8506233.674642.5777Neighbours11BLASTN142976.gbk
3332000*35477422775Island text1.3838729.948926.276Neighbours11BLASTNIslandViewer 332000.gbk
41063173*108629123119Island text1.8618733.557639.992Neighbours11BLASTN+1063173.gbk