Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014816: Asticcacaulis excentricus CB 48 chromosome 1, complete sequence

NCBI: NC_014816

Host Lineage: Asticcacaulis excentricus; Asticcacaulis; Caulobacteraceae; Caulobacterales; Proteobacteria; Bacteria

General Information: Environment: Fresh water; Isolation: Pondwater; Temp: Mesophile; Isolation: pond water. Asticcacaulis excentricus inhabits aquatic environments and plays an important part in biogeochemical cycling of organic nutrients. This bacterium undergoes an unusual developmental cycle in which a swarming motile cell becomes a stalked cell that is attached to a solid surface. The stalked cell then undergoes asymmetric cell division and produces one flagellated motile daughter cell and one stalked daughter cell. Thus, the asymmetric processes in this organism provide useful models for differentiation and development.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1545441*57145526015Island text1.9666131.302842.9613Neighbours11BLASTN+545441.gbk
21592799161379320995Island text1.4814428.362122.5667Neighbours11BLASTN+IslandViewer 1592799.gbk
32357000239416937170Island text1.7104127.254537.5419Neighbours11BLASTN+IslandViewer 2357000.gbk
42446236249509148856Island text2.4198433.977434.0276Neighbours11BLASTN+IslandViewer 2446236.gbk