Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014815: Micromonospora sp. L5 chromosome, complete genome

NCBI: NC_014815

Host Lineage: Micromonospora; Micromonospora; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Fresh water, Soil; Temp: Mesophile. Micromonospora sp. L5 was isolated from the roots of the Casuarina equisetifolia in Irapuato, México. This organism is able to fix nitrogen into ammonia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1622048*64270320656Island text1.5226816.121523.0194Neighbours11BLASTN622048.gbk
2658893*68838329491Island text2.7421415.628512.0606Neighbours11BLASTN+658893.gbk
3841484*89809956616Island text1.8391614.12313.2263Neighbours11BLASTN+841484.gbk
41490957*151776526809Island text1.9052215.478719.1856Neighbours11BLASTN+1490957.gbk
51686409*171202125613Island text1.9578715.362812.1651Neighbours11BLASTN+1686409.gbk
62055286*207874223457Island text1.7281311.098616.7925Neighbours11BLASTN+2055286.gbk
72363460*239102727568Island text5.8833425.430230.9739Neighbours11BLASTN2363460.gbk
82639339*265728817950Island text1.7601211.317510.7687Neighbours11BLASTN2639339.gbk
93005970302653820569Island text2.1453912.42713.2477Neighbours11BLASTN+3005970.gbk
103272791*329485822068Island text2.7019414.098312.7246Neighbours11BLASTN+3272791.gbk
113790050381555325504Island text2.0750714.21514.1181Neighbours11BLASTN+3790050.gbk
124385759442159935841Island text2.3365113.823515.4952Neighbours11BLASTN+4385759.gbk
134491413451775626344Island text1.875712.087610.9151NeighboursBLASTN+4491413.gbk
144621552466359942048Island text1.5391411.840412.6681Neighbours11BLASTN4621552.gbk
155603000562327720278Island text1.5543916.550127.3886Neighbours11BLASTN+5603000.gbk
165888934*590800519072Island text1.5036711.691417.3164Neighbours11BLASTN5888934.gbk
176576983660151124529Island text1.9807715.650524.3624Neighbours11BLASTN+6576983.gbk
186616500*671195895459Island text2.2764215.250619.9983Neighbours11BLASTN+6616500.gbk
196779538*680255323016Island text2.7667414.441714.6023Neighbours11BLASTN+6779538.gbk