n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)
n0_4mer:D = Distance between local and global OU patterns
n0_4mer:PS = Distance between 2 strands of same DNA molecule
Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS
NC_014811: Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequence
NCBI: NC_014811
Host Lineage: Mycobacterium gilvum Spyr1; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Country: Greece; Environment: Creosote-contaminated soil, Soil; Temp: Mesophile; Isolation: creosote contaminated soil; Country:Greece: near Ioannina, Epirus. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. These organism are common in soil and freshwater.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!