Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014810: Helicobacter felis ATCC 49179, complete genome

NCBI: NC_014810

Host Lineage: Helicobacter felis; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This organism was originally isolated from the gastric mucosa of cats and was subsequently found to also infect human. Helicobacter felis is a microaerophilic, urease-positive, spiral-shaped bacterium found in the stomach of cats and dogs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
190813318024100Island text1.4156830.113137.4589Neighbours343BLASTN+9081.gbk