Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014804: Thermococcus barophilus MP chromosome, complete genome

NCBI: NC_014804

Host Lineage: Thermococcus barophilus; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: This organism was collected from the chimney wall of a Mid-Atlantic hydrothermal vent known as "Snakebite", at a depth of 3550 m. It was isolated under in situ pressure. True barophilic and hyperthermophilic archaeon strain.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
178248*10609927852Island text1.860528.040547.0086Neighbours378BLASTN78248.gbk
2189368*21267023303Island text1.6559927.364141.0281Neighbours36BLASTN189368.gbk
334166336547323811Island text1.4851828.721233.0998Neighbours36BLASTN341663.gbk
4401313*42416822856Island text1.7311524.969641.1256Neighbours21BLASTN+401313.gbk
5803510*83046226953Island text2.2846843.117333.5132Neighbours36BLASTN+803510.gbk
61183780122727143492Island text1.8964338.079638.7074Neighbours313BLASTN+IslandViewer 1183780.gbk
71354970*137719722228Island text1.9867739.258647.2058Neighbours36BLASTN+IslandViewer 1354970.gbk
81856388187523118844Island text1.8226425.119639.8831Neighbours21BLASTN1856388.gbk
91898419*192294324525Island text1.7384324.498416.4515Neighbours21BLASTN1898419.gbk