Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014774: Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete

NCBI: NC_014774

Host Lineage: Liberibacter solanacearum; Liberibacter; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This unculturable bacterium causes Zebra Chip disease of potato. The bacterium was identified in 2008 and named as "Candidatus Liberibacter solanacearum" The disease causes million dollar loss in U.S. potato industry. Liberibacters are phloem-limited bacteria that are spread from infected to healthy plants. The species epithet 'solanacearum' refers to the family of plant hosts found to contain these organisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1171500*20917537676Island text1.8757625.463127.5635Neighbours21BLASTN+IslandViewer 171500.gbk
2239865*25913419270Island text1.5089221.601440.3338Neighbours21BLASTN+239865.gbk
3293800*31883025031Island text3.0394229.734849.3084Neighbours21BLASTN293800.gbk
4605085*63229927215Island text2.3554927.237737.4063Neighbours21BLASTN+IslandViewer 605085.gbk
567169569432722633Island text1.8936420.476740.7906Neighbours21BLASTN671695.gbk
6995000*101800623007Island text2.0694727.72145.8887Neighbours21BLASTN995000.gbk
71019273*103809918827Island text3.4979820.908340.4191Neighbours21BLASTN1019273.gbk
81057856*107976721912Island text1.6664521.401941.3467Neighbours21BLASTN+1057856.gbk
91120383*115550835126Island text1.9717925.821752.0106Neighbours21BLASTN1120383.gbk
101210004*126949959496Island text2.0032925.516929.2767Neighbours21BLASTN+IslandViewer 1210004.gbk