Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014761: Oceanithermus profundus DSM 14977 chromosome, complete genome

NCBI: NC_014761

Host Lineage: Oceanithermus profundus; Oceanithermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: Environment: Deep sea, Hydrothermal vent, Marine; Temp: Thermophile; Temp: 60C; Isolation:deep sea hot vent Pacific Ocean: East Pacific Rise. Oceanithermus profundus is a moderate thermophile originally isolated from a hydrothermal vent in the Pacific Ocean.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
174500*10128126782Island text2.8694522.757822.9254Neighbours11BLASTN+74500.gbk
241737743812520749Island text1.7088217.60315.1622Neighbours11BLASTN+417377.gbk
351698153850621526Island text2.8482516.208718.262Neighbours11BLASTN+516981.gbk
474311376488521773Island text2.0544416.386718.2513Neighbours11BLASTN+743113.gbk
51196669*122024823580Island text2.4782913.758515.7084Neighbours11BLASTN1196669.gbk
61321187*134459923413Island text1.8753219.097120.4699Neighbours11BLASTN+1321187.gbk
71405408*143243427027Island text1.9226617.052717.8918Neighbours11BLASTN1405408.gbk
81588755*160834819594Island text1.9299414.972423.1636Neighbours11BLASTN1588755.gbk
91715377*173823422858Island text1.6437414.053417.1458Neighbours11BLASTN+1715377.gbk
101795304*182036125058Island text1.8709318.536825.0679Neighbours11BLASTN+1795304.gbk
111981435*200568024246Island text1.7527916.00817.225Neighbours11BLASTN1981435.gbk
122189500*221744427945Island text4.5060423.922125.6767Neighbours11BLASTN2189500.gbk
132248000227024722248Island text1.5180816.267218.3999Neighbours11BLASTN+2248000.gbk