Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014760: Mycoplasma bovis PG45 chromosome, complete genome

NCBI: NC_014760

Host Lineage: Mycoplasma bovis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This bacterium causes a contagious disease of cattle causing respiratory disease, mastitis, and arthritis. It is found worldwide and is inherently resistant to certain groups of antibiotics because it does not possess a cell wall. More recently, this species has become resistant to tetracycline, tilmicosin and spectinomycin which have been traditionally used in its control. The disease is spread between herds by the transfer of infected but seemingly healthy animals which shed viruses. It has also been introduced into healthy herds via frozen semen collected from an infected bull. The economic losses and negative impact on international trade from this disease have been considerable, and efforts are now underway to develop a vaccine.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1297355272022986Island text1.7682214.321623.3472Neighbours21BLASTN+29735.gbk
2101469*12432622858Island text1.4806314.524620.2826Neighbours21BLASTN+101469.gbk
3299392*32976830377Island text1.7435315.695327.9586Neighbours21BLASTN299392.gbk
441969244267522984Island text1.8059215.111919.1223Neighbours21BLASTN419692.gbk
5925933*95269126759Island text1.7845121.565935.6875Neighbours21BLASTN+925933.gbk