Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014759: Marivirga tractuosa DSM 4126 chromosome, complete genome

NCBI: NC_014759

Host Lineage: Marivirga tractuosa; Marivirga; Flammeovirgaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Country: Vietnam; Isolation: beach sand from Nha Trang; Temp: Mesophile; Temp: 30C; Flexibacter tractuosus is a member of a group of bacteria which move by gliding. These organisms are often found in aquatic or semi-aquatic environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131973934609926361Island text2.8409842.95552.6401Neighbours21+319739.gbk
268117270226321092Island text1.5544923.250239.224Neighbours21BLASTN+681172.gbk
31957979198044322465Island text1.5111524.726435.0895Neighbours21BLASTN1957979.gbk
41999000*202498525986Island text3.0530626.528938.942Neighbours21BLASTN1999000.gbk
52099623212222122599Island text1.4192819.236430.6371Neighbours21BLASTN+2099623.gbk
62438492*250862570134Island text1.7154125.745529.2309Neighbours21BLASTN+2438492.gbk
72598515262265324139Island text1.7871118.132933.4085Neighbours21BLASTN+2598515.gbk
82883500*290365320154Island text1.9061517.880634.6449Neighbours21BLASTN2883500.gbk
93572500*360200929510Island text1.7396418.978731.5084Neighbours21BLASTN3572500.gbk
104133809*416032126513Island text2.9314128.395340.3592Neighbours21BLASTN+4133809.gbk