Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014758: Calditerrivibrio nitroreducens DSM 19672 chromosome, complete

NCBI: NC_014758

Host Lineage: Calditerrivibrio nitroreducens; Calditerrivibrio; Deferribacteraceae; Deferribacterales; Deferribacteres; Bacteria

General Information: Country: Japan; Environment: Host; Isolation: Terrestrial hot spring; Japan, Nagano; Temp: Thermophile; Tem: 55C. This is a moderately thermophilic, nitrate-reducing bacterium, isolated from hot spring water from Yumata, Nagano, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110687*2919618510Island text2.2838123.507440.2241Neighbours21BLASTN+10687.gbk
2245707*26409918393Island text1.5610422.853839.4628Neighbours21BLASTN+245707.gbk
3310394*35375743364Island text1.8803925.242547.3463Neighbours21BLASTN310394.gbk
457974160229422554Island text1.5383223.77840.0231Neighbours21BLASTN+579741.gbk
51207894123842730534Island text3.434245.622329.9381Neighbours21BLASTNIslandViewer 1207894.gbk
61349494*137004820555Island text2.2647724.061743.5102Neighbours21BLASTN1349494.gbk
71387470*141004622577Island text2.7850731.645653.9969Neighbours21BLASTN1387470.gbk
81489761*151270922949Island text1.8360523.72241.9296Neighbours21BLASTN+1489761.gbk
91546898*157379926902Island text2.3506626.230849.3182Neighbours21BLASTN+1546898.gbk
101573023*159515322131Island text2.0072124.01238.604Neighbours21BLASTN+1573023.gbk
111992683*201540922727Island text2.61629.20546.9972Neighbours21BLASTN1992683.gbk