Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014752: Neisseria lactamica ST-640, complete genome

NCBI: NC_014752

Host Lineage: Neisseria lactamica; Neisseria; Neisseriaceae; Neisseriales; Proteobacteria; Bacteria

General Information: Neisseria lactamica ST-640 was isolated from a nasopharyngeal culture. This organism is a nonpathogenic, commensal, bacterium closely related to the pathogenic Neisseria meningitidis. While commonly isolated from nose and throat cultures of children Neisseria lactamica is only rarely isolated from adults.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123601*4343619836Island text1.6568431.125454.5377Neighbours35BLASTN+23601.gbk
298117*12709928983Island text1.8823938.348843.8427Neighbours35BLASTN98117.gbk
3131994*15436422371Island text1.5014735.177552.9541Neighbours35BLASTN+IslandViewer 131994.gbk
4197000*22735630357Island text2.8536340.139729.2941Neighbours24BLASTNIslandViewer 197000.gbk
5324832*34389919068Island text1.5036436.391540.8231Neighbours35BLASTN+IslandViewer 324832.gbk
6617987*63975421768Island text1.7874437.672535.1025Neighbours35BLASTN617987.gbk
783461687970445089Island text2.6724337.275331.8697Neighbours24BLASTN+IslandViewer 834616.gbk
893300096491831919Island text1.6574735.361343.6997Neighbours24BLASTNIslandViewer 933000.gbk
91063506109116227657Island text2.286935.843625.7994Neighbours24BLASTN+IslandViewer 1063506.gbk
101331447135039918953Island text1.5732532.022154.7296Neighbours35BLASTN1331447.gbk
111363562138602122460Island text1.6153330.664550.3077Neighbours35BLASTN1363562.gbk
121391615142388832274Island text1.7969632.322227.7292Neighbours24BLASTN+IslandViewer 1391615.gbk
131530000155313723138Island text1.5590729.684540.1389Neighbours35BLASTN1530000.gbk
142087998*211535127354Island text1.9702737.391638.7292Neighbours35BLASTNIslandViewer 2087998.gbk