Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014751: Mycoplasma leachii PG50 chromosome, complete genome

NCBI: NC_014751

Host Lineage: Mycoplasma leachii; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma leachii, formerly Mycoplasma sp. 'bovine group 7', was originally isolated from cattle suffering from arthritis and mastitis in Australia. Mycoplasma leachii is part of the mycoides cluster like Mycoplasma mycoides SC and Mycoplasma capricolum, but it can infect both bovine and caprine hosts.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1119976*13961619641Island text1.5707711.746120.6785Neighbours21BLASTN+119976.gbk
2225477*24539519919Island text1.5462117.265325.4258Neighbours21BLASTN+225477.gbk
325803728045122415Island text1.8154514.188419.7283Neighbours21BLASTN+258037.gbk
4302152*32009917948Island text1.5584212.59737.96077Neighbours21BLASTN+302152.gbk
541900043715018151Island text2.1067212.433117.5569Neighbours21BLASTN419000.gbk
6449001*46805619056Island text1.6227812.150421.6835Neighbours21BLASTN449001.gbk
7772912*80869035779Island text2.0800815.741725.8684Neighbours21BLASTN+772912.gbk
8946155*97018324029Island text5.6303417.067623.3183Neighbours21BLASTN+946155.gbk