Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014738: Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,

NCBI: NC_014738

Host Lineage: Riemerella anatipestifer; Riemerella; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Country: USA; Isolation: Duck blood; Temp: Mesophile; Temp: 37C. This bacterium is the causative agent of a septicemic disease in ducks, geese, turkeys and other birds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155782*7840222621Island text1.4557320.318636.0275Neighbours21BLASTN55782.gbk
216770719133623630Island text1.8896121.097737.532Neighbours323BLASTN+167707.gbk
3469945*49214722203Island text1.4329121.218431.0513Neighbours21BLASTN+469945.gbk
41507641*153018722547Island text2.832124.593142.2791Neighbours21BLASTN1507641.gbk
51635000*165944324444Island text2.7854324.700542.5Neighbours21BLASTN+1635000.gbk
61742654*176760924956Island text1.4034320.452340.7662BLASTN+1742654.gbk
72011554203521223659Island text1.5191720.198233.1283Neighbours21BLASTN2011554.gbk
82094000213098936990Island text2.621325.727641.644Neighbours21BLASTN+2094000.gbk