Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014735: Halogeometricum borinquense DSM 11551 plasmid pHBOR01, complete

NCBI: NC_014735

Host Lineage: Halogeometricum borinquense; Halogeometricum; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Isolation: Solar salterns of Cabo Rojo, Puerto Rico; Temp: Mesophile; Temp: 40C; Habitat: Solar saltern; This organism is an extreme halophile and required a minimum of 8% NaCl for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113033830338Island text1.6845130.070537.5118Neighbours12BLASTN+1.gbk
214992218327533354Island text2.6288143.5234.4181Neighbours12BLASTN+149922.gbk
319943422939329960Island text3.6912946.558341.1897Neighbours12BLASTN199434.gbk