Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014734: Paludibacter propionicigenes WB4 chromosome, complete genome

NCBI: NC_014734

Host Lineage: Paludibacter propionicigenes; Paludibacter; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Country: Japan; Environment: Soil; Isolation: Rice plant residue in anoxic rice-field soil; Temp: Mesophile. This is a strictly anaerobic, propionate-producing bacterial species isolated from rice plant residue in anoxic rice-field soil in Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1183214*20946526252Island text2.2574128.245246.38Neighbours21BLASTN+183214.gbk
2353159*37609922941Island text1.3325631.505430.0524Neighbours21BLASTN+353159.gbk
340042641996719542Island text1.6017234.693227.2282Neighbours24BLASTN400426.gbk
467710371671739615Island text1.5807326.353137.3615Neighbours21BLASTN677103.gbk
5849941*86973319793Island text1.5968632.20639.5206Neighbours325BLASTN849941.gbk
61049273106909219820Island text1.5065329.055237.2701Neighbours21BLASTN1049273.gbk
71428282*145110222821Island text2.0891526.578942.8432Neighbours21BLASTN+1428282.gbk
81757995*178055422560Island text1.4705630.417130.2473Neighbours21BLASTN1757995.gbk
92285762*230877023009Island text2.0141827.551545.8626Neighbours21BLASTN2285762.gbk
103086165*311447828314Island text1.6170533.587438.4432Neighbours24BLASTN+3086165.gbk