Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014733: Methylovorus sp. MP688 chromosome, complete genome

NCBI: NC_014733

Host Lineage: Methylovorus; Methylovorus; Methylophilaceae; Methylophilales; Proteobacteria; Bacteria

General Information: Methylotrophic bacteria are a group of bacteria which are able to grow aerobically at the expense of methanol as the sole source of carbon and energy, and therefore could serve as biocatalysts for the conversion of methanol to commercially valuable multicarbon compounds like amino acids and cytochromes. Pink-pigmented facultative methylotrophs of the genus Methylovorus are ubiquitous in soil, air and water environments. The MP688 strain was isolated from soil as an PQQ producer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1107394*13952432131Island text3.4328441.412119.0883Neighbours41BLASTN+107394.gbk
21073540*110013626597Island text1.8436138.243435.4148Neighbours14BLASTN+1073540.gbk
31223359125683633478Island text2.0258732.719124.7348Neighbours41BLASTN+1223359.gbk
41573171160366730497Island text2.3347344.097130.2014NeighboursBLASTN+1573171.gbk
51857020189477137752Island text2.3263934.809620.1282Neighbours41BLASTN+1857020.gbk
62095996*211863222637Island text1.3544827.796727.4455Neighbours11BLASTN+2095996.gbk
72201485*222586124377Island text1.4162229.201129.9123Neighbours11BLASTN+2201485.gbk
82363838*239108027243Island text2.8459239.646228.3636Neighbours41BLASTN2363838.gbk
92851984*287799926016Island text1.5665826.918224.4Neighbours41BLASTN+2851984.gbk