Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014729: Halogeometricum borinquense DSM 11551 chromosome, complete genome

NCBI: NC_014729

Host Lineage: Halogeometricum borinquense; Halogeometricum; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Isolation: Solar salterns of Cabo Rojo Puerto Rico; Temp: Mesophile; Temp: 40C; Habitat: Solar saltern. This organism is an extreme halophile and required a minimum of 8% NaCl for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1296103*31944823346Island text1.7096732.271440.4921Neighbours11BLASTN+296103.gbk
2385500*40741921920Island text1.9485730.266440.4847Neighbours12BLASTN+385500.gbk
363015266685636705Island text2.6025644.167432.7576Neighbours12BLASTN+630152.gbk
4703000*73207929080Island text2.356233.434631.4466Neighbours12BLASTN+703000.gbk
5800892*82341022519Island text1.6178926.408719.6565Neighbours12BLASTN+800892.gbk
61185294*123631951026Island text1.5039928.477941.4918Neighbours11BLASTN1185294.gbk
71248782127809429313Island text1.7726734.26128.152Neighbours12BLASTN1248782.gbk
81367862*138961221751Island text1.7426729.474741.1249Neighbours12BLASTN1367862.gbk
91627620164807720458Island text1.5293823.9337.4284Neighbours12BLASTN1627620.gbk
101908086193016122076Island text1.6394829.41725.8992Neighbours12BLASTN1908086.gbk
112776009279752221514Island text1.7050326.443519.4429Neighbours12BLASTN+2776009.gbk