Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014724: Lactobacillus amylovorus GRL 1112 chromosome, complete genome

NCBI: NC_014724

Host Lineage: Lactobacillus amylovorus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus amylovorus GRL 1112 strain has been isolated from porcine faeces. This strain is also of interest as a putative probiotic. Lactobacillus amylovorus is a common member of the normal gastrointestinal tract microbiota in pigs, and specific strains have been suggested as potential probiotics. In addition, Lactobacillus amylovorus has also been isolated from plant material.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159000*8067321674Island text2.4528332.95151.1403Neighbours21BLASTN+59000.gbk
2439594*48564446051Island text2.5776131.069247.6584Neighbours21BLASTN+439594.gbk
31101950113608734138Island text1.6317526.669842.5376Neighbours21+1101950.gbk
41731238*175280921572Island text2.3844626.54736.8615Neighbours21BLASTN+1731238.gbk