Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014722: Burkholderia rhizoxinica HKI 454, complete genome

NCBI: NC_014722

Host Lineage: Burkholderia rhizoxinica; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is bacterial endosymbiont of the fungus Rhizopus microsporus. This bacterium produces the antitumor agent rhizoxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115359353593Island text2.0650233.91138.6371Neighbours11BLASTN+IslandViewer 1.gbk
2193500*21504421545Island text1.6712327.28621.9454Neighbours11BLASTN+IslandViewer 193500.gbk
346728749614528859Island text2.0337238.112352.2744Neighbours121BLASTN+IslandViewer 467287.gbk
477148379485123369Island text1.9873629.223532.3399Neighbours11BLASTN+771483.gbk
584608490038654303Island text1.8864129.609324.546Neighbours11BLASTN+846084.gbk
61084616*111430129686Island text2.2150532.554339.4583Neighbours11BLASTN+IslandViewer 1084616.gbk
71191380*121434222963Island text1.4849824.39219.8928Neighbours11BLASTN+1191380.gbk
81467996*149010322108Island text1.7389927.057621.823Neighbours11BLASTN+IslandViewer 1467996.gbk
91497244152063523392Island text1.9026131.332525.5678Neighbours11BLASTN+1497244.gbk
101552454158471932266Island text1.9885734.650833.2924Neighbours11BLASTN+IslandViewer 1552454.gbk
111647978167820630229Island text1.527626.219226.3199Neighbours11BLASTN+IslandViewer 1647978.gbk
121682000170493522936Island text1.4921126.969837.2457Neighbours11BLASTNIslandViewer 1682000.gbk
131971305*199935928055Island text1.5461226.991118.7761Neighbours11BLASTN+1971305.gbk
142070864209390023037Island text1.7041927.965935.5078Neighbours11BLASTN+IslandViewer 2070864.gbk
152260489228672626238Island text1.9969430.723225.3201Neighbours11BLASTN+2260489.gbk
162392781241096118181Island text1.6045523.850937.1178Neighbours121BLASTNIslandViewer 2392781.gbk