Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014721: Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete

NCBI: NC_014721

Host Lineage: Caldicellulosiruptor kristjanssonii; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Iceland; Environment: Hot spring; Isolation: Hot spring biomat; Iceland; Temp: Thermophile. Country:Iceland. Caldicellulosiruptor kristjanssonii is able to degrade cellulose, xylan and other complex substrates. This organism is thermophilic with a growth temperature optimum of 72 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1114375007438638Island text2.1124926.01545.3716Neighbours21BLASTN+IslandViewer 11437.gbk
2135982*15944023459Island text2.4304732.746735.7568Neighbours21BLASTN+135982.gbk
331499033963824649Island text1.9162823.932746.4469Neighbours21BLASTN+IslandViewer 314990.gbk
4373607*39446820862Island text2.2580429.51945.7092Neighbours21BLASTN+373607.gbk
543450145738422884Island text1.6293722.466339.7186Neighbours21BLASTN+434501.gbk
6508000*53060122602Island text1.6192523.537840.5043Neighbours21BLASTN508000.gbk
772994274886918928Island text1.7901622.662341.4728Neighbours21BLASTN+IslandViewer 729942.gbk
81028841*104757818738Island text1.5023723.449741.7895Neighbours21BLASTN1028841.gbk
91629063*165209923037Island text1.6942123.498339.5054Neighbours21BLASTN1629063.gbk
101777644*181600538362Island text2.7391433.143644.2464Neighbours21BLASTN+1777644.gbk
111953708*197235218645Island text1.8121323.288536.2712Neighbours21BLASTN+1953708.gbk
122012751*203422421474Island text2.1500823.545241.958Neighbours21BLASTN+2012751.gbk
132043910206538221473Island text1.5398622.835635.1017Neighbours21BLASTN2043910.gbk
142135500*219587560376Island text1.8136324.826633.4489Neighbours21BLASTN+IslandViewer 2135500.gbk
152201790*223159929810Island text2.1861127.99240.1688Neighbours21BLASTN+2201790.gbk
162534403255359919197Island text2.7077723.55541.8991Neighbours21BLASTNIslandViewer 2534403.gbk