Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014720: Caldicellulosiruptor kronotskyensis 2002 chromosome, complete

NCBI: NC_014720

Host Lineage: Caldicellulosiruptor kronotskyensis; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Russia; Environment: Hot spring; Isolation: terrestrial neutral geothermal spring; Temp: Thermophile; Temp: 70C. Caldicellulosiruptor kronotskyensis was originally isolated from a hot spring in Russia. This organism is a cellulolytic thermophile able to grow at temperatures of up to 82 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141703476030591Island text2.509526.086647.191Neighbours21BLASTN4170.gbk
215411120396349853Island text1.8710126.776737.1963Neighbours21BLASTN+IslandViewer 154111.gbk
3383587*40757023984Island text3.344134.280948.5321Neighbours21BLASTN+383587.gbk
480727683873331458Island text1.9318726.817936.3038Neighbours21BLASTN+IslandViewer 807276.gbk
5980000103151751518Island text1.8837629.61846.4583Neighbours21BLASTNIslandViewer 980000.gbk
61140765*116059919835Island text2.1676823.330441.3164Neighbours21BLASTN1140765.gbk
71161841*118148419644Island text3.8952436.66152.6891Neighbours21BLASTN+1161841.gbk
81737574*175691719344Island text1.8775622.984640.3277Neighbours21BLASTN1737574.gbk
91877500*189530517806Island text2.0471823.163942.1976Neighbours21BLASTN1877500.gbk
102420455*245425933805Island text2.3577726.950342.3302Neighbours21BLASTN+2420455.gbk