Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014718: Burkholderia rhizoxinica HKI 454 chromosome, complete genome

NCBI: NC_014718

Host Lineage: Burkholderia rhizoxinica; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is bacterial endosymbiont of the fungus Rhizopus microsporus. This bacterium produces the antitumor agent rhizoxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1102852*12309920248Island text1.6018325.790428.0597Neighbours11BLASTN+102852.gbk
2232832*29223859407Island text2.1672836.326628.4108Neighbours11BLASTN232832.gbk
3440960*46077219813Island text1.5491527.132821.3899Neighbours11BLASTN+440960.gbk
4630188*65954429357Island text1.9268129.603538.1017Neighbours11BLASTN+630188.gbk
579152881681725290Island text1.8327831.872225.202Neighbours11BLASTN+IslandViewer 791528.gbk