Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014666: Frankia sp. EuI1c chromosome, complete genome

NCBI: NC_014666

Host Lineage: Frankia; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Host, Plant symbiont, Soil; Temp: Mesophile. Frankia sp. EuI1c was isolated from the Autumn olive, Elaeagnus umbellata. Frankia sp. (strain EuI1c) is an aerobic Gram-positive bacterium isolated from four continents (North America, South America, Africa, and Asia) and different habitats, including dry soils with high salinity levels, steppe-like plains at 900 m, and mountain forests at 3,000 m.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113876*3476920894Island text1.6601411.541413.9166Neighbours11BLASTN+13876.gbk
2300571*32924028670Island text2.2594714.249422.6911Neighbours11BLASTN+300571.gbk
31117000113732420325Island text2.0118712.456611.3351Neighbours11BLASTN1117000.gbk
41601972*162651924548Island text1.7591110.010321.3607Neighbours11BLASTN+1601972.gbk
51805806183084625041Island text1.533912.01859.30397Neighbours11BLASTN1805806.gbk
61844882186336118480Island text1.5714410.773314.1126Neighbours11BLASTN+1844882.gbk
71969602199407424473Island text1.5410810.946311.75Neighbours11BLASTN+1969602.gbk
82589227260927220046Island text1.580610.955717.158Neighbours11BLASTN2589227.gbk
92629799265021520417Island text1.751611.123510.1261Neighbours11BLASTN+2629799.gbk
103311893333417922287Island text1.6113410.186613.9664Neighbours11BLASTN+3311893.gbk
113334195335235518161Island text1.7196610.69437.40041Neighbours11BLASTN3334195.gbk
123629696364909919404Island text1.6064411.621521.314Neighbours11BLASTN3629696.gbk
134043279406262719349Island text1.5333113.401812.5452Neighbours11BLASTN4043279.gbk
144118000*413786919870Island text1.555613.059312.9492Neighbours11BLASTN+4118000.gbk
154419693*444409924407Island text1.6893110.524113.1197Neighbours11BLASTN4419693.gbk
164547873*457124523373Island text1.4754518.178530.5031Neighbours11BLASTN+4547873.gbk
175057000507605319054Island text1.502313.387617.4768Neighbours11BLASTN5057000.gbk
185449884*547207422191Island text1.8976511.84414.61Neighbours11BLASTN+5449884.gbk
196940532*696752226991Island text1.7870512.034917.9969Neighbours11BLASTN+6940532.gbk
207152782717565722876Island text1.7238914.059816.6136Neighbours11BLASTN+7152782.gbk
217222000*724739625397Island text1.4837211.98939.73931Neighbours11BLASTN7222000.gbk
227641060*766551924460Island text1.5151415.679718.0655Neighbours11BLASTN7641060.gbk
237838500786209823599Island text1.8256312.13112.8949Neighbours11BLASTN+7838500.gbk
248016066805302136956Island text1.7221812.063111.1084Neighbours11BLASTN8016066.gbk
258198554822359925046Island text1.8407814.267712.1135Neighbours11BLASTN8198554.gbk
268459724848362923906Island text2.000311.880912.6657Neighbours11BLASTN+8459724.gbk
278488567850749318927Island text1.495211.557615.8302Neighbours11BLASTN8488567.gbk
288759873878287423002Island text1.6744311.100714.4581Neighbours11BLASTN8759873.gbk