Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014664: Rhodomicrobium vannielii ATCC 17100 chromosome, complete genome

NCBI: NC_014664

Host Lineage: Rhodomicrobium vannielii; Rhodomicrobium; Hyphomicrobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Rhodomicrobium vannielii is a budding prosthecate bacterium. Rhodomicrobium vannielii is a purple non-sulfur bacterium isolated in 1949 that is photosynthetic under anaerobic conditions. It is able to grow with ferrous iron as electron donor, although this does not support growth over a long time.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149390051632122422Island text1.6238528.617528.4708Neighbours11BLASTN+493900.gbk
21360524*137887118348Island text1.4883224.872326.4466Neighbours11BLASTN+1360524.gbk
31560926158164220717Island text1.5618730.129325.9502Neighbours11BLASTN+1560926.gbk
41614568163829223725Island text1.6727624.481727.653Neighbours11BLASTN+1614568.gbk
51669642*169159921958Island text2.096227.685235.1362Neighbours11BLASTN+1669642.gbk
62373451*239661823168Island text2.1938928.415532.0042Neighbours11BLASTN+2373451.gbk
72669562269113921578Island text1.4952428.094623.2062Neighbours11BLASTN+2669562.gbk
83003633*302609922467Island text1.5781822.245931.4106Neighbours11BLASTN+3003633.gbk