Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014659: Rhodococcus equi 103S, complete genome

NCBI: NC_014659

Host Lineage: Rhodococcus equi; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Rhodococcus equi is a Gram-positive, facultative intracellular pathogen that lives in the macrophages of humans and animals, especially horses and foals.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11006500103066624167Island text1.6046914.744324.9012Neighbours11BLASTN+1006500.gbk
21731121175858327463Island text1.9760520.35325.887Neighbours11BLASTN1731121.gbk
32737843276016922327Island text1.4792215.363617.2372Neighbours11BLASTN+2737843.gbk
42769486*278996220477Island text1.5299319.598715.5098Neighbours11BLASTN2769486.gbk
53654979*368109926121Island text2.1627720.410817.4541Neighbours11BLASTN+3654979.gbk
64299552*434331043759Island text1.8627316.462423.6146Neighbours11BLASTN+4299552.gbk
74908182493780229621Island text1.5690115.654313.6902Neighbours11BLASTN4908182.gbk