Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014658: Methanothermus fervidus DSM 2088 chromosome, complete genome

NCBI: NC_014658

Host Lineage: Methanothermus fervidus; Methanothermus; Methanothermaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Country: Iceland; Environment: Fresh water, Hot spring; Isolation: Hot solfataric spring from Iceland; Temp: Hyperthermophile; Temp: 83C. Thermophilic methanogen. Methanothermus fervidus was isolated from a solfataric hot spring in Iceland.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1417537*44297125435Island text2.7435516.856231.9284Neighbours21BLASTN417537.gbk
2620819*64701826200Island text3.7471720.139737.6158Neighbours21BLASTN620819.gbk
3701020*72473923720Island text1.8355518.868628.4688Neighbours21BLASTN701020.gbk
474345376945726005Island text1.6916119.185629.0267NeighboursBLASTN+743453.gbk
5816282*84120124920Island text2.8402220.226435.9701Neighbours21BLASTN816282.gbk