Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014657: Caldicellulosiruptor owensensis OL chromosome, complete genome

NCBI: NC_014657

Host Lineage: Caldicellulosiruptor owensensis; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: USA; Environment: Hot spring; Isolation: Freshwater sediment; Temp: Hyperthermophile; Temp: 79C; Isolation: freshwater sediment, Owens Lake, California. Caldicellulosiruptor owensensis is a thermphilic gram positive bacterium. This organism produces a thermostable xylanase which may have industrial uses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1291567*31392722361Island text2.4038429.496745.8426Neighbours21BLASTN291567.gbk
247347949752724049Island text2.5490923.072735.6925Neighbours21BLASTN+473479.gbk
3673500*69431420815Island text3.0644923.084933.7526Neighbours21BLASTNIslandViewer 673500.gbk
4742739*76761424876Island text1.8263524.819839.7983Neighbours21BLASTN742739.gbk
5914071*93981425744Island text1.8223525.873644.7046Neighbours21BLASTN+IslandViewer 914071.gbk
6944000*96534721348Island text2.3452224.217742.4861Neighbours21BLASTN944000.gbk
71193985*121535121367Island text1.8136922.381639.2983Neighbours21BLASTN1193985.gbk
81518721*154034821628Island text2.4528432.324443.4451Neighbours21BLASTN+1518721.gbk
91540500*155862118122Island text2.0053922.720141.9479Neighbours21BLASTN1540500.gbk
101775929*179657020642Island text1.8887324.744643.5656Neighbours21BLASTN+1775929.gbk
112127500214809920600Island text1.899724.448336.0998Neighbours21BLASTN+IslandViewer 2127500.gbk
122236193226367227480Island text1.7982524.454841.4562Neighbours21BLASTN2236193.gbk
132283176*230494421769Island text2.5403833.909240.9425Neighbours21BLASTN+2283176.gbk