Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014656: Bifidobacterium longum subsp. longum BBMN68 chromosome, complete

NCBI: NC_014656

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Bifidobacterium longum BBMN68 was isolate from long-lived man's intestinal. This organism is found in adult humans and formula fed infants as a normal component of gut flora.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
162456165241127851Island text2.2935833.719728.8129Neighbours11BLASTNIslandViewer 624561.gbk
21161188120036239175Island text3.2701842.061933.3117Neighbours116BLASTNIslandViewer 1161188.gbk
31365673138884123169Island text1.5321623.914836.3564BLASTN+1365673.gbk
41536540156365427115Island text2.3599135.946338.4057Neighbours11BLASTNIslandViewer 1536540.gbk
51634397*165685922463Island text1.6484526.814223.7167Neighbours11BLASTN1634397.gbk
61704101172935225252Island text1.5167524.325132.7628Neighbours11BLASTN+1704101.gbk
71829336186741738082Island text2.6769836.831738.6446Neighbours116BLASTN+IslandViewer 1829336.gbk
81956277*198155425278Island text1.7289928.858633.2717Neighbours11BLASTNIslandViewer 1956277.gbk