Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014655: Leadbetterella byssophila DSM 17132 chromosome, complete genome

NCBI: NC_014655

Host Lineage: Leadbetterella byssophila; Leadbetterella; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Country: South Korea; Temp: Mesophile; Isolation: cotton waste composts used for mushroom. Strictly aerobic Gram-negative bacterium. This species was isolated from cotton-waste compounds used for the cultivation of the oyster mushroom in South Korea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117641*3651218872Island text1.5198624.337341.083Neighbours21BLASTN+17641.gbk
2130636*17060039965Island text1.5819930.448729.8857Neighbours21BLASTN+130636.gbk
337993740175621820Island text1.684425.648142.2981Neighbours21+379937.gbk
4424486*45513230647Island text1.6035626.41932.4883Neighbours21BLASTN+424486.gbk
557000059262622627Island text1.5739727.06129.224Neighbours21BLASTN+570000.gbk
6614874*63936924496Island text1.5223628.740140.3876Neighbours21BLASTN614874.gbk
785138187379922419Island text1.5024829.203925.9203Neighbours21BLASTN+851381.gbk
81038352*106236824017Island text1.6346524.449840.9124Neighbours21BLASTN1038352.gbk
91098428111714518718Island text1.9770424.212732.1903Neighbours21+1098428.gbk
101396672141972223051Island text1.5660625.924133.9414Neighbours21BLASTN1396672.gbk
111835848185524619399Island text1.4994625.255440.7236Neighbours21BLASTN1835848.gbk
122092365*211311320749Island text1.7141931.106742.362Neighbours21BLASTN+2092365.gbk
132366201*239263426434Island text2.0791930.915645.3527Neighbours21BLASTN2366201.gbk
142533929255575421826Island text1.5605826.663638.47232533929.gbk
152581968260496422997Island text1.5745524.647437.066Neighbours21BLASTN2581968.gbk
162705482272826722786Island text3.2223524.072821.5922Neighbours21BLASTN2705482.gbk
172747399*276714319745Island text1.9376135.700448.1575Neighbours21BLASTN+2747399.gbk
182782707*280609923393Island text1.5110924.726437.7756Neighbours21BLASTN2782707.gbk
192874640289822823589Island text3.5074424.285639.8404Neighbours21BLASTN2874640.gbk
203141144*316378122638Island text3.0426829.455152.6919Neighbours21BLASTN3141144.gbk
213345204336628621083Island text1.587725.590841.7456Neighbours21BLASTN3345204.gbk
223615426363831622891Island text1.5108526.422740.6992Neighbours21+3615426.gbk