Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014654: Halanaerobium sp. 'sapolanicus' chromosome, complete genome

NCBI: NC_014654

Host Lineage: Halanaerobium hydrogeniformans; Halanaerobium; Halanaerobiaceae; Halanaerobiales; Firmicutes; Bacteria

General Information: Environment: Fresh water, Sediment; Temp: Mesophile; Temp: 34 - 42C. Organisms identified in the genus Halanaerobium (also known as Haloanaerobium) were first isolated from the Great Salt Lake in Utah, USA and have since been isolated from diverse saline environments such as oil reserviors, brine-seawater interfaces and hypersaline sediments. These bacteria are extremely salt-tolerant and are able to grow in concentrations of salt as high as 25%.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2910529105Island text3.5509924.44745.5029Neighbours21BLASTN1.gbk
218883520899520161Island text1.8778320.637834.852Neighbours21BLASTN+188835.gbk
322170724588524179Island text1.5457520.844530.3722Neighbours21BLASTN221707.gbk
430200032323021231Island text1.5525525.697840.3018Neighbours21BLASTN+302000.gbk
5391201*41082919629Island text1.6100921.891736.3097Neighbours21BLASTN391201.gbk
6422013*44483122819Island text1.6039625.080335.1474Neighbours21BLASTN422013.gbk
7454633*49599841366Island text1.6794822.102335.905Neighbours21BLASTN+454633.gbk
854996657044920484Island text1.6984220.619534.8581Neighbours21BLASTN+549966.gbk
959258261582123240Island text1.6385622.033932.8055Neighbours21BLASTN+592582.gbk
10646500*66530218803Island text2.0571320.212233.4694Neighbours21BLASTN+646500.gbk
1189529891832823031Island text1.5285122.908636.3382Neighbours21BLASTN+895298.gbk
121113116113933826223Island text1.8456521.940236.2705Neighbours21BLASTN1113116.gbk
131529500*154813318634Island text1.5697520.685431.5721Neighbours21BLASTN1529500.gbk
141548194156426816075Island text1.5328722.116536.4809Neighbours21BLASTN1548194.gbk
151581689160373022042Island text1.6009724.779434.4509Neighbours21BLASTN+1581689.gbk
161802007*182258020574Island text1.6495320.65942.2098Neighbours21BLASTN+1802007.gbk
172101500*212969828199Island text2.5360823.350542.0982Neighbours21BLASTN2101500.gbk
182138794*216285324060Island text3.5217224.083846.6277Neighbours21BLASTN2138794.gbk
192180994*220812927136Island text3.0096727.694142.0967Neighbours21BLASTN+2180994.gbk
202277461230062123161Island text1.4639920.798930.2473Neighbours21BLASTN+2277461.gbk
212311818233086219045Island text1.4942221.656131.8979Neighbours21BLASTN2311818.gbk