Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014650: Geobacillus sp. Y4.1MC1 chromosome, complete genome

NCBI: NC_014650

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Country: USA; Isolation: Bath Hot Spring in Yellowstone National Park; Temp: Thermophile. Geobacillus species are chemo-organotrophic, obligately thermophilic, neutrophilic, motile, spore-forming, aerobic or facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130444132866624226Island text1.9860435.323254.4998Neighbours319BLASTN+304441.gbk
2376070*40632830259Island text1.791933.797451.7806Neighbours21BLASTN376070.gbk
347566250567930018Island text1.826733.225956.7487Neighbours21BLASTN+475662.gbk
4603500*62917225673Island text2.1406839.46149.1688Neighbours21BLASTN+603500.gbk
51410790143450623717Island text1.977227.617321.1171Neighbours35BLASTN+1410790.gbk
61763308178359920292Island text2.9815530.656424.4046Neighbours25BLASTN1763308.gbk
71862165188838326219Island text2.0843131.629634.1505Neighbours21BLASTN+1862165.gbk
81893758*191759923842Island text3.5929130.050924.7322Neighbours21BLASTN+1893758.gbk
91942935*197033527401Island text2.0040642.797550.0223Neighbours21BLASTN+1942935.gbk
102097900212404526146Island text2.0473438.804350.1481Neighbours21BLASTN+2097900.gbk
112143033216309920067Island text2.6345128.896621.0357Neighbours21BLASTN+2143033.gbk
122417509244049422986Island text1.6013229.996649.4488Neighbours31BLASTN+2417509.gbk
132500817252809927283Island text1.9035327.405511.6184Neighbours21BLASTN+2500817.gbk
142943975296401820044Island text2.64328.645316.9601Neighbours21BLASTN+2943975.gbk
152969866*300125831393Island text1.5194728.969824.5315Neighbours319BLASTN+2969866.gbk
163438466*345759919134Island text2.192629.380323.174Neighbours21BLASTN+3438466.gbk
173589604361372524122Island text1.7753326.635533.4526Neighbours21BLASTN+3589604.gbk