Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014644: Gardnerella vaginalis ATCC 14019 chromosome, complete genome

NCBI: NC_014644

Host Lineage: Gardnerella vaginalis; Gardnerella; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Gardnerella vaginalis (strain ATCC 14019) is an aerobic, host-associated Gram-positive bacterium isolated from the vaginal tracts of women with symptomatic bacterial vaginosis. The bacterium is the most prevalent sexually transmitted organism and associated with bacterial vaginosis. The bacterium has also been associated with bacteremia, urinary track infections, and neonatal meningitis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112396623966Island text1.5924133.367743.7652BLASTN+1.gbk
2383500*40295719458Island text1.9471129.928753.3408Neighbours47BLASTN383500.gbk
31275038129896323926Island text2.818533.797457.2725Neighbours21BLASTN+1275038.gbk
41363445*138866725223Island text1.5025927.596137.9705BLASTN+1363445.gbk
51456689*148703830350Island text2.2168128.164524.394Neighbours47BLASTN+1456689.gbk
61491389*152336931981Island text1.5506128.501947.722BLASTN1491389.gbk
71532500*157370341204Island text1.502230.471843.8909Neighbours314BLASTN+1532500.gbk