Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014643: Rothia dentocariosa ATCC 17931 chromosome, complete genome

NCBI: NC_014643

Host Lineage: Rothia dentocariosa; Rothia; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Rothia dentocariosa is a pleomorphic, gram-positive, aerobic, coccoid- to rod-shaped bacterium that has been isolated from the oral cavity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1545007374619247Island text1.5717334.612138.1715BLASTN54500.gbk
219594821843222485Island text1.4667935.141138.8537BLASTN+195948.gbk
338250040460922110Island text2.1238643.897148.6149BLASTN+382500.gbk
453570855459918892Island text1.7774334.615248.4103BLASTN+535708.gbk
5609544*63209922556Island text1.5192835.147129.8514BLASTN+609544.gbk
689213891920827071Island text2.0593138.686642.7519BLASTN+892138.gbk
71075282*109889523614Island text1.9696239.042429.5591075282.gbk
81123601116474341143Island text3.1022742.510340.5922BLASTN+1123601.gbk
91251847*128007028224Island text2.3915150.867335.11BLASTN+1251847.gbk
101577021*159566418644Island text1.4068535.864553.216BLASTN+1577021.gbk
111986440*203863452195Island text1.6553236.773555.296BLASTN+1986440.gbk
122056280*215309996820Island text1.70935.439636.0092BLASTN+2056280.gbk
132354507*238041425908Island text1.9834638.727145.1115BLASTN+2354507.gbk