Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014642: Achromobacter xylosoxidans A8 plasmid pA82, complete sequence

NCBI: NC_014642

Host Lineage: Achromobacter xylosoxidans; Achromobacter; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls (PCBs) and is able to use 2-chlorobenzoate (2-CB) and 2,5-dichlorobenzoate (2,5-DCB) as sole sources of carbon and energy. Achromobacter xylosoxidans is a catalase- and oxidase-positive, motile, gram-negative rod that can cause opportunistic infections in immunocompromised patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123689626549928604Island text1.6019526.390423.2466Neighbours11BLASTN236896.gbk