Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014640: Achromobacter xylosoxidans A8 chromosome, complete genome

NCBI: NC_014640

Host Lineage: Achromobacter xylosoxidans; Achromobacter; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls (PCBs) and is able to use 2-chlorobenzoate (2-CB) and 2,5-dichlorobenzoate (2,5-DCB) as sole sources of carbon and energy. Achromobacter xylosoxidans is a catalase- and oxidase-positive, motile, gram-negative rod that can cause opportunistic infections in immunocompromised patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17699210018023189Island text2.0637922.108617.1423Neighbours11BLASTN+IslandViewer 76992.gbk
21179382119809918718Island text4.2979829.165838.8695Neighbours11BLASTNIslandViewer 1179382.gbk
32693060*271944826389Island text1.5960216.107311.8407Neighbours11BLASTN+IslandViewer 2693060.gbk
42754894279077735884Island text1.5554417.286822.4875Neighbours11BLASTN+2754894.gbk
53808639*382767319035Island text1.9393324.123531.9629Neighbours11BLASTN+IslandViewer 3808639.gbk
64031336406296631631Island text1.8742220.939432.563Neighbours11BLASTN+IslandViewer 4031336.gbk
74193193*421647523283Island text1.7050516.010119.7618Neighbours11BLASTN+IslandViewer 4193193.gbk
84293430434085347424Island text3.7977135.307524.4706Neighbours11BLASTN+IslandViewer 4293430.gbk
94532095456112929035Island text1.4014819.485722.5971Neighbours11BLASTN+IslandViewer 4532095.gbk
104951076*497901827943Island text1.7479221.903623.0692Neighbours11BLASTN+IslandViewer 4951076.gbk
115047201*507205924859Island text1.6201417.60431.7213Neighbours11BLASTNIslandViewer 5047201.gbk
125897421591726219842Island text1.720219.347322.8464Neighbours11BLASTN+IslandViewer 5897421.gbk
136745873*680036754495Island text1.9262621.305221.2108Neighbours11BLASTNIslandViewer 6745873.gbk
146815264685212636863Island text3.4435626.977138.4212Neighbours11BLASTN+IslandViewer 6815264.gbk
156971000*699424823249Island text1.5260618.269718.0436Neighbours11BLASTNIslandViewer 6971000.gbk