Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014638: Bifidobacterium bifidum PRL2010 chromosome, complete genome

NCBI: NC_014638

Host Lineage: Bifidobacterium bifidum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Bifidobacterium bifidum is commonly isolated from human feces and is used as a probiotic to maintain healthy gut flora. This is a probiotic microorganism, isolated from infant stool samples.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156500*8975333254Island text1.4279923.658626.084Neighbours11BLASTN+IslandViewer 56500.gbk
214852716875920233Island text1.5450121.889217.7001Neighbours11BLASTN+148527.gbk
318311522650043386Island text1.7379224.422928.4324Neighbours11BLASTN+183115.gbk
4321382*35116229781Island text1.6475228.329532.0535Neighbours11BLASTN321382.gbk
5363577*38602922453Island text1.4894525.165130.8087Neighbours11BLASTNIslandViewer 363577.gbk
61043854*107645332600Island text2.8376433.9926.5838Neighbours116BLASTN+IslandViewer 1043854.gbk
71139824*116219422371Island text1.7764625.807327.7568Neighbours11BLASTNIslandViewer 1139824.gbk
81333976*136348929514Island text2.0233629.738430.1708Neighbours11BLASTN+IslandViewer 1333976.gbk
91509637*153249422858Island text1.5239719.595131.7822Neighbours11BLASTN1509637.gbk
102199799*222899929201Island text1.5528824.165931.6506Neighbours11BLASTN2199799.gbk