Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014633: Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence

NCBI: NC_014633

Host Lineage: Ilyobacter polytropus; Ilyobacter; Fusobacteriaceae; Fusobacteriales; Fusobacteria; Bacteria

General Information: Country: Germany; Environment: Marine; Isolation: Marine mud from Germany; Temp: Mesophile; Temp: 30C. Ilyobacter polytropus was isolated from anoxic marine mud. This organism is able to ferment 3-hydroxybutyrate, crotonate, glycerol and other compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185002686518366Island text2.3736921.467740.6688Neighbours21BLASTN+8500.gbk
299744*12547625733Island text2.6523224.263543.2948Neighbours21BLASTN+99744.gbk
326508629147026385Island text2.2855425.155540.9529Neighbours323BLASTN+265086.gbk
433918136292823748Island text2.0198721.858631.0478Neighbours323BLASTN339181.gbk
5442755*48227939525Island text1.7123218.686237.9279Neighbours21BLASTN442755.gbk
658385860647322616Island text2.9937823.250541.5348Neighbours21BLASTN+583858.gbk
7655693*67496619274Island text2.1301621.017843.3609Neighbours323+655693.gbk
868119870409922902Island text1.6439622.058933.2663Neighbours21BLASTN+681198.gbk
9713285*73412020836Island text2.0654824.384743.4002Neighbours21BLASTN713285.gbk
10837588*88324745660Island text2.1266424.816842.0662Neighbours21BLASTN+837588.gbk