Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014628: Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence

NCBI: NC_014628

Host Lineage: Paenibacillus polymyxa; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Paenibacillus polymyxa was isolated from soil and is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Plants treated with Paenibacillus polymyxa have increased resistance to plant pathogens and increased drought resistance. This organism has been shown to produce a number of compounds with antifungal or antibacterial activity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115176*3479319618Island text1.8454120.875937.1483Neighbours363BLASTN15176.gbk
2168994*19433425341Island text2.0489822.898938.9484Neighbours21BLASTN168994.gbk
325250027059918100Island text1.897520.831333.978Neighbours21BLASTN+252500.gbk
431922234393724716Island text2.0635724.907638.4769Neighbours21BLASTN+319222.gbk
550175552599924245Island text1.4852620.896226.6476Neighbours21BLASTN501755.gbk