Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014625: Ketogulonicigenium vulgare Y25 chromosome, complete genome

NCBI: NC_014625

Host Lineage: Ketogulonicigenium vulgare; Ketogulonicigenium; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This species is Gram-negative, facultatively anaerobic, nonmotile, with ovoid to rod-shaped cells isolated from soil. Optimum temperature range is 27-29 degrees C. Strains can oxidize L-sorbose to 2-keto-L-gulonic acid, a key intermediate in the synthesis of vitamin C. Isolated from soil.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11187608121066523058Island text2.2664430.896940.1187Neighbours11BLASTN+1187608.gbk
21903277192609922823Island text2.0842528.458835.9575Neighbours11BLASTN+1903277.gbk