Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014624: Eubacterium limosum KIST612 chromosome, complete genome

NCBI: NC_014624

Host Lineage: Eubacterium limosum; Eubacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Eubacterium limosum KIST612 is an acetogenic bacterium isolated from an anaerobic digester and has a high growth rate on synthesis gas (CO; carbon monoxide) using it as a sole energy source. This organism produces acetate as well as butyrate and ethanol as fermentation products from syngas. Therefore, E. limosum KIST612 has been considered for a model strain for bioenergy production from syngas (obtained from biomass).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114000016298922990Island text1.5282734.478425.8923Neighbours23BLASTN140000.gbk
217139419447823085Island text1.9025134.45453.9408BLASTN171394.gbk
322421324697322761Island text2.053636.032427.3224Neighbours21BLASTN+224213.gbk
428750030685519356Island text2.1304834.247325.7979Neighbours23BLASTN+287500.gbk
537003039296422935Island text1.503834.572650.1249370030.gbk
655151060827656767Island text1.8281835.17630.4421Neighbours315BLASTN551510.gbk
782894385480325861Island text2.0098235.596733.6757Neighbours315828943.gbk
81010193102941819226Island text2.4380633.983931.4106Neighbours316+1010193.gbk
91204881122860423724Island text1.7966438.539644.24431204881.gbk
101235818126054724730Island text1.669433.396243.8056+1235818.gbk
111349950136891618967Island text1.8465533.53325.8801Neighbours3151349950.gbk
121369642140852038879Island text1.7533733.50728.1986Neighbours315BLASTN+1369642.gbk
131549312156960020289Island text1.6899535.173528.6369Neighbours315BLASTN+1549312.gbk
141675500*176359988100Island text2.8993436.216922.6241Neighbours21BLASTN+1675500.gbk
151768226180826340038Island text2.0679835.910533.174Neighbours24BLASTN+1768226.gbk
161840209*186871028502Island text3.6405839.104819.7188Neighbours23+1840209.gbk
172211771223418122411Island text2.2306737.182719.4421Neighbours32BLASTN2211771.gbk
182297000*232400627007Island text2.4849836.327227.0408Neighbours41BLASTN+2297000.gbk
192368078239453326456Island text3.063838.018721.2425Neighbours23BLASTN+2368078.gbk
202478985*250759928615Island text3.1971139.291723.7785Neighbours22BLASTN+2478985.gbk
212549219256716617948Island text1.7160133.636332.9577Neighbours23BLASTN+2549219.gbk
222569604258889819295Island text1.7395934.043740.2607Neighbours37+2569604.gbk
232668157*271893350777Island text1.575841.740946.6975Neighbours315BLASTN+2668157.gbk
242878457289609917643Island text1.8880233.581650.5847Neighbours337+2878457.gbk
252912527*293352621000Island text1.779234.106742.3859Neighbours315+2912527.gbk
262944437296427019834Island text1.6358634.443340.4703+2944437.gbk
272996377*301680520429Island text2.2259735.654419.4796Neighbours23BLASTN+2996377.gbk
283316916333649119576Island text2.2338234.871130.2016Neighbours23+3316916.gbk
293463272*348659623325Island text1.5522836.946749.8663463272.gbk
303538094*355723019137Island text2.058533.642427.884Neighbours21BLASTN3538094.gbk
313561756358994728192Island text2.1430333.709320.6724Neighbours21BLASTN+3561756.gbk
323741764*376367121908Island text1.6600935.616644.9385BLASTN+3741764.gbk
333810163*383400323841Island text1.822939.141147.9919BLASTN3810163.gbk