Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014623: Stigmatella aurantiaca DW4/3-1 chromosome, complete genome

NCBI: NC_014623

Host Lineage: Stigmatella aurantiaca; Stigmatella; Cystobacteraceae; Myxococcales; Proteobacteria; Bacteria

General Information: Social gliding soil bacterium. Stigmatella aurantica, commonly isolated from rotting wood and bark, is a member of a group of organisms called myxobacteria. These organisms have a complex development and differentiation life cycle. When cell density increases, the organism switches to "social motility" where aggregates of cells can gather together into masses termed fruiting bodies that may consist of up to 100,000 cells. Stigmatella aurantica produces a number of compounds, such as aurafuron A and stigmatellin, which may be important as anti-cancer agents.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
195523898929438Island text1.4655819.789619.9537Neighbours11BLASTN9552.gbk
224359326840524813Island text2.0329220.218329.3935Neighbours11BLASTN243593.gbk
346432448821023887Island text1.9376618.919618.2611Neighbours11464324.gbk
465942267859919178Island text1.4936620.713824.8142Neighbours11BLASTN659422.gbk
572308974665223564Island text1.7580418.181516.7073Neighbours11BLASTN+723089.gbk
61074299*113422959931Island text2.0299123.03518.1318Neighbours11BLASTN+IslandViewer 1074299.gbk
71273025129288619862Island text1.6011917.862419.5121Neighbours11BLASTN1273025.gbk
81335971135840622436Island text1.5130317.929217.1885Neighbours11BLASTN+1335971.gbk
91600360*163049930140Island text2.9411426.327418.2631Neighbours11BLASTN+IslandViewer 1600360.gbk
101633889165506921181Island text1.5231118.954315.2395Neighbours11BLASTN1633889.gbk
111829000185135222353Island text1.737619.006314.097Neighbours11BLASTN+1829000.gbk
121883259190483621578Island text1.7363918.512121.6705Neighbours11BLASTN+1883259.gbk
132216825224397327149Island text1.6834522.636822.4811Neighbours11BLASTN2216825.gbk
142283253230640123149Island text1.4884918.926326.9399Neighbours11BLASTN2283253.gbk
152418762245959940838Island text1.7174419.812616.7626Neighbours11BLASTN+IslandViewer 2418762.gbk
162475598*249759922002Island text1.5809720.391415.0959Neighbours11BLASTNIslandViewer 2475598.gbk
172962330300109938770Island text1.594820.369721.552Neighbours11BLASTN+IslandViewer 2962330.gbk
183029853305952129669Island text1.5390618.820419.2057Neighbours11BLASTN+IslandViewer 3029853.gbk
193097675311759919925Island text2.1385719.297223.1499Neighbours11BLASTN+IslandViewer 3097675.gbk
203136340315713120792Island text1.6395420.044919.8082Neighbours11BLASTNIslandViewer 3136340.gbk
213199248*322191522668Island text1.8974618.93323.0546Neighbours11BLASTN+IslandViewer 3199248.gbk
223238996*325776918774Island text1.8433317.774220.6359Neighbours11BLASTN+3238996.gbk
233462500348014217643Island text2.3180717.968811.6336Neighbours11BLASTN+IslandViewer 3462500.gbk
243503218352685823641Island text1.5362318.002225.6Neighbours11BLASTN+3503218.gbk
254140565415991219348Island text1.5347917.83814.8008Neighbours11BLASTN4140565.gbk
264426416444997023555Island text1.8053417.616116.1591Neighbours11BLASTN+4426416.gbk
274535544*458023544692Island text1.4331418.473116.3301Neighbours11BLASTN+IslandViewer 4535544.gbk
284662990*468168218693Island text1.6538617.75718.8726Neighbours11BLASTN+4662990.gbk
294683671*472453840868Island text1.7928318.374822.1676Neighbours11BLASTN+IslandViewer 4683671.gbk
304740221476959929379Island text2.3717421.594519.2096Neighbours11BLASTN4740221.gbk
314788768481298824221Island text1.4303120.136227.8658Neighbours11BLASTN4788768.gbk
324999032*501775318722Island text1.6172517.129715.885Neighbours11BLASTN+4999032.gbk
335029932508446054529Island text1.7171420.478132.1135Neighbours11BLASTN+5029932.gbk
345181000*520389922900Island text2.4506120.955917.8357Neighbours11BLASTN+5181000.gbk
355350116537065520540Island text1.6470517.600918.8634Neighbours11BLASTNIslandViewer 5350116.gbk
365617655563919721543Island text1.6186919.007618.981Neighbours11BLASTN+5617655.gbk
375661108568739026283Island text2.704522.870622.4514Neighbours11BLASTN5661108.gbk
385885903590954323641Island text1.507818.592423.5362Neighbours11BLASTN5885903.gbk
395942918*597391931002Island text1.5511521.002632.1588Neighbours11BLASTN+5942918.gbk
406095658612017624519Island text1.5143818.21528.6028Neighbours11BLASTN6095658.gbk
416150028*618651836491Island text1.9526223.739129.8458Neighbours11BLASTN6150028.gbk
426509000653534226343Island text1.7441219.874625.6607Neighbours11BLASTN+IslandViewer 6509000.gbk
436651798669022538428Island text2.2612622.764119.462Neighbours11BLASTN+IslandViewer 6651798.gbk
446809000683117922180Island text1.6429719.025915.7723Neighbours11BLASTN+IslandViewer 6809000.gbk
456950638*697978129144Island text2.6431423.899221.7552Neighbours11BLASTN+6950638.gbk
467045822706581119990Island text1.5447418.427815.1074Neighbours11BLASTN7045822.gbk
477093203711580022598Island text1.5423218.658211.0732Neighbours11BLASTN7093203.gbk
487133149*715509921951Island text1.6468117.887420.9009Neighbours11BLASTN+7133149.gbk
497331860*735320421345Island text1.657217.399614.9775Neighbours11BLASTN+IslandViewer 7331860.gbk
507482229*753941057182Island text1.9545318.60415.3813Neighbours11BLASTN+IslandViewer 7482229.gbk
517550461757422723767Island text2.34318.690315.0488Neighbours11BLASTN+IslandViewer 7550461.gbk
527720828774436523538Island text1.5610117.801622.0185Neighbours11BLASTN7720828.gbk
537963238798828025043Island text1.7938122.389625.9898Neighbours11BLASTN+IslandViewer 7963238.gbk
548463363848668823326Island text1.4512218.731810.0743Neighbours11BLASTN8463363.gbk
558648000867083222833Island text1.5301918.154219.1619Neighbours11BLASTN+8648000.gbk
568763551878689723347Island text1.5517218.06331.4289Neighbours11BLASTN8763551.gbk
578798820*882346624647Island text2.3744219.500922.8225Neighbours11BLASTN+8798820.gbk
588930235*895009919865Island text2.1638719.069223.2671Neighbours11BLASTN8930235.gbk
599038177906419826022Island text1.7637419.963913.0206Neighbours11BLASTN+IslandViewer 9038177.gbk
609089998910760117604Island text1.4946518.409516.5306Neighbours11BLASTN9089998.gbk
619363409*938654423136Island text1.9557517.704330.3508Neighbours11BLASTN9363409.gbk
629492000951423622237Island text1.6619918.838224.2721Neighbours11BLASTN9492000.gbk
639976000999944123442Island text1.5618916.044527.9267Neighbours11BLASTN9976000.gbk
6410036628*1006030023673Island text1.5226119.613316.9205Neighbours11BLASTN10036628.gbk