Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014622: Paenibacillus polymyxa SC2 chromosome, complete genome

NCBI: NC_014622

Host Lineage: Paenibacillus polymyxa; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Paenibacillus polymyxa was isolated from soil and is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Plants treated with Paenibacillus polymyxa have increased resistance to plant pathogens and increased drought resistance. This organism has been shown to produce a number of compounds with antifungal or antibacterial activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1653599*67737423776Island text2.4620737.625651.8658Neighbours37BLASTN+653599.gbk
272400074675922760Island text1.9249936.054553.6944Neighbours21BLASTN+724000.gbk
31514416153466520250Island text1.5909940.846845.8205Neighbours37BLASTN+1514416.gbk
42114244*213620221959Island text2.0878539.702452.715Neighbours37BLASTN2114244.gbk
52477019250122324205Island text1.6077737.561541.9533Neighbours23BLASTN2477019.gbk
62733000277562042621Island text3.9918533.347518.3214BLASTN2733000.gbk
73525017354878423768Island text1.8621437.290253.4322Neighbours23BLASTN+3525017.gbk
83676859369617019312Island text1.8248938.21350.9093Neighbours37+3676859.gbk
93819495*383971420220Island text1.6763136.146849.0904Neighbours37BLASTN+3819495.gbk
103955851399740141551Island text1.5728436.003241.5428Neighbours21BLASTN+IslandViewer 3955851.gbk
114361553*438580024248Island text1.8810540.162153.0715Neighbours37BLASTN+4361553.gbk
124517709454013322425Island text1.4461834.22342.1245Neighbours37BLASTN4517709.gbk
134922977498479061814Island text2.0113338.670452.5353Neighbours315BLASTN+IslandViewer 4922977.gbk
145251000527300022001Island text1.5032639.449742.479Neighbours37BLASTN+5251000.gbk
155315500534266027161Island text1.5937336.551652.4546Neighbours37BLASTN+5315500.gbk
165378000540164123642Island text1.5177935.448151.6354Neighbours21BLASTN5378000.gbk
175553628557675923132Island text1.5403440.036848.7088Neighbours37+5553628.gbk
185662000568009918100Island text3.7686734.829927.6769Neighbours37BLASTN5662000.gbk
195683400*570653123132Island text1.5247934.429753.9225Neighbours37BLASTN5683400.gbk