Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014618: Enterobacter cloacae SCF1 chromosome, complete genome

NCBI: NC_014618

Host Lineage: Enterobacter lignolyticus; Enterobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Soil; Temp: Mesophile; Isolation: Short Cloud Forest soil; Country:USA: Luquillo LTER, Puerto Rico. This organism was isolated anaerobically from tropical forest soils collected from the Short Cloud Forest site in the El Yunque National Forest in Puerto Rico, USA, part of the Luquillo Long-Term Ecological Research Station.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157707*8139523689Island text1.4408432.982718.2422Neighbours51BLASTN+57707.gbk
258624061570129462Island text1.8614135.886350.7365Neighbours41BLASTN+IslandViewer 586240.gbk
3690056*73259942544Island text4.8097750.762119.0864Neighbours41BLASTN+IslandViewer 690056.gbk
41040381107445834078Island text2.7038544.423226.6584Neighbours51BLASTN+IslandViewer 1040381.gbk
51103239113809934861Island text4.2940949.490636.2828Neighbours41BLASTN+IslandViewer 1103239.gbk
61295322*131683821517Island text2.5328842.63830.3288Neighbours41BLASTN+IslandViewer 1295322.gbk
71452927*147588122955Island text1.6308733.669749.5702Neighbours51BLASTN+1452927.gbk
81593360*161721723858Island text1.6949734.329436.8985Neighbours51BLASTN+1593360.gbk
91700784172553324750Island text1.850337.639228.0945Neighbours51BLASTN+IslandViewer 1700784.gbk
101752434179103238599Island text1.7964135.984327.0045Neighbours41BLASTN+IslandViewer 1752434.gbk
111809369*183621726849Island text2.3402238.827939.4354Neighbours41BLASTN+IslandViewer 1809369.gbk
122139639*215944619808Island text5.761852.139225.5506Neighbours51BLASTN+2139639.gbk
132423661244643722777Island text2.1319340.513724.8025Neighbours51BLASTN2423661.gbk
142705769273359327825Island text1.5674331.456716.6738Neighbours51BLASTN+IslandViewer 2705769.gbk
152788533280665118119Island text1.4812433.694115.9885Neighbours51BLASTN+2788533.gbk
162989000*301239123392Island text1.7681535.993420.6871Neighbours51BLASTN2989000.gbk
173482053350635324301Island text1.4931333.104317.9559Neighbours51BLASTN+3482053.gbk
183700640*372036719728Island text1.8220336.842326.6027Neighbours41BLASTN+3700640.gbk
194010689404351232824Island text1.7320639.386225.016Neighbours51BLASTN+IslandViewer 4010689.gbk
204114004416714153138Island text1.5166532.791232.8999Neighbours41BLASTN+IslandViewer 4114004.gbk
214312295*433703424740Island text1.6830135.07137.5826Neighbours51BLASTN+4312295.gbk
224657719468745729739Island text4.6432349.742121.9731Neighbours41BLASTN+IslandViewer 4657719.gbk