Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014616: Bifidobacterium bifidum S17 chromosome, complete genome

NCBI: NC_014616

Host Lineage: Bifidobacterium bifidum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Bifidobacterium bifidum is commonly isolated from human feces and is used as a probiotic to maintain healthy gut flora.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
154500*7894124442Island text1.8059326.728225.3502Neighbours11BLASTN+IslandViewer 54500.gbk
216931119254623236Island text1.8275424.866237.0331Neighbours11BLASTN+169311.gbk
321311823500821891Island text1.6604221.639436.3828BLASTN+IslandViewer 213118.gbk
446200048423522236Island text1.5028626.191641.2657Neighbours11BLASTN+IslandViewer 462000.gbk
586208488993027847Island text2.005926.649142.4822Neighbours11BLASTN+IslandViewer 862084.gbk
61065500*109015124652Island text1.9988728.196721.915Neighbours11BLASTN+IslandViewer 1065500.gbk
71296287*132414727861Island text2.018331.27329.803Neighbours11BLASTN+IslandViewer 1296287.gbk
81415951143761821668Island text1.7400922.749623.6239Neighbours11BLASTN+1415951.gbk
92172025*220099928975Island text1.6315724.460932.4045Neighbours11BLASTN2172025.gbk