Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014562: Pantoea vagans C9-1 chromosome, complete genome

NCBI: NC_014562

Host Lineage: Pantoea vagans; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple. Strains belonging to this species have been isolated from eucalyptus leaves showing symptoms of bacterial blight and die-back in Uganda, Uruguay and Argentina and from maize suffering from brown stalk rot in South Africa.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1469154*49304023887Island text1.860332.766620.309Neighbours41BLASTN+469154.gbk
2983398*101509931702Island text1.8709738.811332.5979Neighbours41BLASTN+983398.gbk
31402863142199619134Island text1.5206435.2917.4808Neighbours51BLASTN+1402863.gbk
41698253172164923397Island text1.6060733.983920.8866Neighbours51BLASTN+1698253.gbk
51772842*180089428053Island text1.7052133.91626.2845Neighbours41BLASTN+1772842.gbk
61844268187632632059Island text3.6523444.80725.3272Neighbours41BLASTN1844268.gbk
71883517*190910525589Island text1.8524434.218224.6554Neighbours51BLASTN+1883517.gbk
81935088195391418827Island text1.522930.398826.0689Neighbours51BLASTN+1935088.gbk
92049921207971629796Island text3.1168845.725222.3084Neighbours41BLASTN+2049921.gbk
102563466*261248449019Island text4.5234256.230120.7688Neighbours41BLASTN+2563466.gbk
112871765*290090029136Island text2.0897440.636121.4056Neighbours41BLASTN+2871765.gbk
123985500*400317017671Island text1.5584729.395722.4083Neighbours41BLASTN3985500.gbk